A307696 Number of evolutionary duplication-loss-histories with n leaves of the caterpillar species tree with 2 leaves.

2, 7, 34, 200, 1318, 9354, 69864, 541323, 4310950, 35066384, 290081932, 2432766082, 20635672664, 176727482860, 1526000459400, 13270616752680, 116124930068670, 1021736927603190, 9033726534916920, 80220639767921370, 715166816624282820, 6398357633173869600

Offset: 1

Author

Michael Wallner, Apr 22 2019

Keywords

• nonn

Comments

An evolutionary history of size n is an ordered rooted (incomplete) binary tree with n leaves describing the evolution of a gene family of a species in phylogenomics. The caterpillar species tree S of size k is a binary tree with k leaves, where any left child is a leaf. Any node of the history is associated to a unique node of S, where specifically every leaf is associated to a leaf of S. A history is created by the following process (note that intermediate trees in this process may not be valid histories): Start with a root node associated to the root of S. For a given tree in the growth process, choose a leaf and perform a duplication, speciation, or (speciation-)loss event. A duplication event creates two children both associated to the same node as its parent. A speciation or (speciation-)loss event can only occur if the node is associated to an internal node in S. In that case, a speciation event creates two children associated to the children of the node in S. A (speciation-)loss event creates only a left or right child, associated to the left or right child in S, respectively.

Examples

			The caterpillar species tree with 2 leaves is equal to
    a
   / \
  1   2
For convenience the internal node is labeled by a, and the leaves by 1,2. The associated nodes in the histories will be denoted by the same labels.
The a(1)=2 histories with n=1 leaf are created by the following growth process:
    a       a
   /         \
  1           2
after one loss event each.
The a(2)=7 histories with n=2 leaves are created by the following growth process:
    a         a     a            a         a         a         a
   / \       /       \          / \       / \       / \       / \
  1   2     1         2        a   a     a   a     a   a     a   a
           / \       / \      /   /     /     \     \   \    \   /
          1   1     2   2    1   1     1       2     2   2    2 1
		

Links

• C. Chauve, Y. Ponty, M. Wallner, Counting and sampling gene family evolutionary histories in the duplication-loss and duplication-loss-transfer models, arXiv preprint arXiv:1905.04971 [math-CO], 2019.

Crossrefs

Caterpillar species tree sequences: A000108 (1 leaf), A307697 (3 leaves), A307698 (4 leaves), A307700 (5 leaves).

Programs

PARI

my(z='z+O('z^30)); Vec(1/2-(1/2)*sqrt(-5+6*sqrt(1-4*z)+4*z)) \\ Michel Marcus, Apr 22 2019

Formula

G.f.: 1/2 - (1/2)*sqrt(-5 + 6*sqrt(1-4*z) + 4*z).